Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015847361.1_cds_XP_016510044.1_22927
CDS Infomation

[gene=LOC107827417] [db_xref=GeneID:107827417] [protein=protein phosphatase 2C 16-like isoform X2] [protein_id=XP_016510044.1] [location=complement(join(48510..48798,48835..48880,50547..50652,50798..51157,51460..52083))] [gbkey=CDS]
Sequence

ATGAAAGCTGAGGTGGGTAGAGTTCCCTTTTGTGGTCCATTGCAGACTGTATTGGGAGCT
GAAAATGGCCTGATTGTTAGCGATAGCATCATTCAGGGAAATGAAGAAGACGAGATTTTA
TCTGTTGGAGAGGATCCTTGTGCAATTAATGGGGAGGAGTTGTTGCCACTGGGTGCTAGC
TCGGAGTTAAGTTTGCCAATTGCTGTTGAAATCGAGGGTATTGACAATGGTCAAATACTT
GCCAAAGTCATAAGTTTGGAGGAAAGGAGTTTTGAGAGAAAGATCAGTAATCTGTCCGCC
GTTGCTGCTATCCCAGATGATGAAATTACTACTGGCCCTACGCTAAAGGCATCCGTAGTG
GTTCTTCCGTTGCCCAGTGAGAATGAACCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAA
TTGGAATGCGTGCCACTCTGGGGCTCTGTATCTATCTGTGGAAAGAGACCAGAGATGGAG
GATGCTCTTATGGTTGTTCCTAATTTCATGAAAATACCTATCAAAATGTTTATTGGTGAT
CGTGTGATTGACGGACTAAGTCAACGTCTGAGTCACCTGACATCTCATTTTTATGGTGTA
TATGATGGTCATGGAGGATCTCAGGTTGCGGATTATTGCTGCAAACGCATTCATTTAGCA
TTAGTTGAGGAGTTAAAACTTTTTAAAGATGATATGGTGGACGGGAGTGCAAAGGACACA
CGTCAGGTGCAGTGGGAGAAGGTCTTTACTAGTTGCTTTCTCAAGGTTGACGATGAAGTT
GGGGGGAAAGTAAACAGTGATCCCGGTGAAGACAACATAGATACCACTAGCTGCGCCTCT
GAACCTATTGCCCCGGAAACTGTGGGGTCCACTGCAGTTGTAGCGGTGATATGTTCATCT
CATATTGTAGTTTCTAATTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCA
ATGGCACTGTCAATTGATCATAAACCAAGCAGAGAAGATGAGTATGCAAGAATTGAAGCA
TCTGGTGGCAAGGTCATTCAGTGGAATGGACATCGTGTTTTTGGCGTCCTTGCAATGTCA
AGATCTATTGGCGACAGATACTTGAAACCATGGATTATACCCGAACCAGAAGTTATGTTT
GTACCACGAGCTAGAGAAGACGAATGCCTAGTTTTAGCTAGTGACGGGTTGTGGGATGTC
ATGTCAAATGAGGAAGCTTGTGAAGTAGCTAGACGACGAATTCTGCTATGGCACAAAAAG
AATGGGACTAACCCTCTGCCGGAAAGGGGCCAAGGAGTTGATCCTGCTGCACAAGCAGCA
GCAGAGTATCTCTCGTCGATGGCTCTTCAAAAAGGTAGCAAAGACAATATATCTGTGATT
GTGGTGGACCTTAAATCTCAAAGGAAATTCAAGAGCAAATGTTAA

Peptide Sequence

PEP ID

XP_016510044.1
PEP Infomation

PREDICTED: protein phosphatase 2C 16-like isoform X2 [Nicotiana tabacum]
Sequence

MKAEVGRVPFCGPLQTVLGAENGLIVSDSIIQGNEEDEILSVGEDPCAINGEELLPLGAS
SELSLPIAVEIEGIDNGQILAKVISLEERSFERKISNLSAVAAIPDDEITTGPTLKASVV
VLPLPSENEPVKESVKSVFELECVPLWGSVSICGKRPEMEDALMVVPNFMKIPIKMFIGD
RVIDGLSQRLSHLTSHFYGVYDGHGGSQVADYCCKRIHLALVEELKLFKDDMVDGSAKDT
RQVQWEKVFTSCFLKVDDEVGGKVNSDPGEDNIDTTSCASEPIAPETVGSTAVVAVICSS
HIVVSNCGDSRAVLYRGKEAMALSIDHKPSREDEYARIEASGGKVIQWNGHRVFGVLAMS
RSIGDRYLKPWIIPEPEVMFVPRAREDECLVLASDGLWDVMSNEEACEVARRRILLWHKK
NGTNPLPERGQGVDPAAQAAAEYLSSMALQKGSKDNISVIVVDLKSQRKFKSKC

Transcript Sequence

Gene sequence data has not been registered.